OligoMinerApp

Results

Here you can dynamically browse and save results, figures and experimental parameters as well as take note of your unique experiment code.

Please, pass mouse over the boxes, over the columns or click the "?" or the "Overview" buttons to get help.


Please annotate your experiment code: 0500523006c879d28fa63242a29b2c7b



RESULTS - Publishing Option

Status: Public



RESULTS - Probes Set

None None

name

start

stop

sequence

Tm

TmS




RESULTS - Graphical Comparison Of Melting Temperatures




RESULTS - Experimental Parameters

number

module

parameters

values

1 Probe design MIN length (bp) 36
2 Probe design MAX length (bp) 20
3 Probe design MIN GC (%) 35
4 Probe design MAX GC (%) 70
5 Probe design MIN Tm (°C) 40
6 Probe design MAX Tm (°C) 60
7 Probe design Prohibited sequences AAAAA,TTTTT,CCCCC,GGGGG
8 Probe design MIN space (bp) 1
9 Probe design [Na+] (mM) 100
10 Probe design [Formamide] (%) 50
11 Probe design thermodynamic table DNA_NN3
12 LDA LDA model 37
13 LDA Threshold (0-1) 0.5
14 LDA [Na+] (mM) 100
15 LDA [Formamide] (%) 50
16 Kmers Substrings length (bp) 16
17 Kmers Substrings MAX off-targets 1
18 Secondary structure Th (°C) 37
19 Secondary structure Linear probability (0-1) 0.25
20 Secondary structure [Na+] (mM) 100
21 Secondary structure [Formamide] (%) 50
22 Stripping temperature [Na+] (mM) 390
23 Stripping temperature [Formamide] (%) 50
24 Bowtie2 Reference genome Homo_sapiens.GRCh38.dna.primary_assembly
25 Generic Probes Strand plus
26 Generic Public name RUNX1-test